Search results for Metabarcoding
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91 datasets for “Metabarcoding”
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Test dataset for assessment FROGS 16S amplicon methodology
Rué, OlivierUpdated 16 Feb 2021
Lien vers la fiche source Grinder (v.0.5.3) (Angly, et al., 2012) was used to simulate …
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A ready-to-use database for DADA2: Diat.barcode_rbcL_312bp_DADA2 based on Diat.barcode v7
Keck, FrançoisUpdated 18 May 2021
… a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail …
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Resilience of helminth - gut microbiota interactions in a large mammal
Nuria MachUpdated 27 Sept 2023
… lumen without hampering the development of larval stages. Metabarcoding approaches were implemented to track faecal microbiota and cyathostomin …
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Environmental DNA data for Dicentrarchus labrax, Merluccius merluccius and Pagellus bogaraveo in the Bay of Biscay
ETH Zürich, SwitzerlandUpdated 24 Oct 2025
… The other half of the extracted DNA was analysed using metabarcoding with teleo primer. The raw metabarcoding data …
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eDNA-based survey of the marine vertebrate biodiversity off the west coast of Guadeloupe (French West Indies)
CNRS UMR 7205 ISYEBUpdated 26 Apr 2024
… eDNAs contained in the samples were analysed by metabarcoding using vertebrate–specific primers (Taberlet et al. 2018).
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Bioindication diatomées : comparaison microscopie / barcoding ADN. Listes floristiques, indices IBD. Projet AFB numéro 15000239 / A30.
Rivera, SinzianaUpdated 4 Dec 2018
… listes obtenues en métabarcoding (méthode des séquences filtrées avec seuil d'assignation à 60%) - "correspondance code station" : des …
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Replication data for "Revealing microbial consortia that interfere with grapevine downy mildew through microbiome epidemiology"
PaolaFOURNIERUpdated 1 Sept 2025
Lien vers la fiche source This study focuses on bacterial 16S and fungal ITS metabarcoding of topsoil, leaf …
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Data and scripts for "Resource landscape shapes the composition and stability of the human vaginal microbiota"
ALIZON, SamuelUpdated 18 Nov 2025
… with vaginal microbiota information (OTUs inferred from 16S metabarcoding data) and metabolomics data. The model folder contains the …
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Evidence for a gut microbial community conferring adaptability to abiotic and biotic stressors in phytophagous insects: the melon fruit fly Zeugodacus cucurbitae (Diptera:Tephritidae) as case study
Hafsi, AbirUpdated 2 Jul 2024
… cucurbitae strains under temperature, diet quality, and antibiotic treatment was assessed using 16S rRNA metabarcoding. Experiment was conducted …
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Metagenetic data and bacterial quantification of 310 Label Rouge broiler carcass samples
Hautefeuille, SophieUpdated 2 Apr 2025
… It includes 16S rRNA metabarcoding data from broiler carcass rinses before and after 7 days of storage at …
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Lactic4Safe : role of bacterial microbiota in the environment, raw milk, and artisanal uncooked pressed cheese, as well as the impact of farming, milking, and cheese-making practices on the colonization of cheese by zoonotic bacterial pathogens
Chochois, VincentUpdated 15 Apr 2025
… bacterial microbiota characterised using 16S rRNA short reads metabarcoding from cheese production and the environment during manufacturing. The …
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Bioinformatic scripts to assess the effect of the cropping system on both community and network α- and β-properties of fungal microbiota
Pauvert, CharlieUpdated 9 May 2019
… Microbial networks inferred from metabarcoding data lack replicability: consequences for next-generation biomonitoring, Submitted).
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Microbial communities in Ornithodoros phacochoerus ticks
Jourdan, HeleneUpdated 11 May 2026
… This dataset give the metabarcoding sequencing results.
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Effects of plant functional group removal on structure and function of soil communities across contrasting ecosystems
Fanin, NicolasUpdated 20 Jan 2025
… biomass (ind g-1) and trophic community composition Metabarcoding= OTU count FungalAssignation = Assignation of eah OTU to a …
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Replication Data for "Extensive multivariate dataset characterizing bacterial community diversity and Campylobacter contamination level in a large number of conventional broilers carcasses after air chilling and refrigerated storage"
Hautefeuille, SophieUpdated 27 Mar 2025
… It includes 16S rRNA metabarcoding data from broiler carcass rinses before and after 7 days of storage at …
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Seed Microbiota Database
Simonin, MarieUpdated 22 Aug 2022
… This database includes metabarcoding data from 63 seed microbiota studies on 50 plant species ( total of 3190 seed …
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atlas_guyane_lauraceae: a small example of input datasets for running yap!
Franc, AlainUpdated 19 Sept 2022
… examples of some programs available in barcoding and metabarcoding in following gitlabs: `yap` (see yap gitlab ) `disseq` and …
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Données de réplication pour : Microbial multiomics approach in understanding blue-veined cheeses bitterness
Theil, SébastienUpdated 13 Jan 2026
… In the present work, microbiological, biochemical, metabarcoding (amplicons sequencing), metagenomic (DNA-Seq) and metatranscriptomic (RNA-Seq) were combined …
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French Guiana : RezoFleuve and spatial patterns Projects :
Lassalle, GillesUpdated 10 Apr 2026
… This innovative program employs a combination of methodologies, including stable isotope analysis (carbon and nitrogen) and dietary metabarcoding …
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Lac de la Muzelle - Carottage Muz12-I – Plant cover and erosion dynamics : impacts of pastoral activities and climatic changes over the last 1600 years - 2017 – Zone Atelier Alpes (IGSN:IEFRA00A4)
EDYTEMUpdated 28 May 2026
… Here we evaluate an approach based on DNA metabarcoding used on lake sediments to provide high-resolution reconstruction …
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