Search results for Metabarcoding
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91 datasets for “Metabarcoding”
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An 18S V4 rDNA metabarcoding dataset of protist diversity in the Atlantic inflow to the Arctic Ocean, through the year and down to 1000 m depth.
University of Oslo, Department of Biosciences, PO Box 1066 Blindern, NO-0316 Oslo, NORWAY University of Duisburg-Essen, Fakultät für Biologie, Universitätsstr. 5, DE-45141 Essen, GERMANYUpdated 12 May 2021
Lien vers la fiche source Arctic marine protist communities have been understudied due to challenging sampling conditions, in …
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Leaf microbiome data for European cultivated grapevine (Vitis vinifera L.) during downy mildew (Plasmopara viticola) epidemics in three wine-producing regions in France
Barroso Bergada, DidacUpdated 28 Oct 2022
… Here we present metabarcoding datasets describing the bacterial and fungal communities from more than 500 leaf samples collected …
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Absolute abundance data for the BCMicrobiome project.
Lesur Kupin, IsabelleUpdated 29 Aug 2022
… The 'Library_Name' column allows the absolute abundance data to be linked with the metabarcoding data that are …
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Rsyst::diatom_rbcl_align_312bp database: a database adapted to DNA metabarcoding (version v7: 23-02-2018)
Vasselon, ValentinUpdated 18 Dec 2024
… nanoides is the curated species name adapted to metabarcoding. This database has been curated for a specific use …
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BIOTROPH - Molecular Ecology
Ozaki, ShinjiUpdated 7 Apr 2026
… of wood mice by using the biomolecular analysis ‘metabarcoding’; (vi) abundance (cover-abundance) of plants of three strata …
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Protocoles pour l'analyse des diatomées par métabarcoding
CHONOVA, TeofanaUpdated 5 Jul 2021
… Outils pédagogiques pour la formation à l’analyse des diatomées par métabarcoding La qualité écologique des milieux aquatiques …
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Outils pédagogiques pour la formation à l’analyse des diatomées par métabarcoding
CHONOVA, TeofanaUpdated 28 Jun 2021
… Outils pédagogiques pour la formation à l’analyse des diatomées par métabarcoding La qualité écologique des milieux aquatiques …
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Replication Data for: Invert emulsions alleviate biotic interactions in bacterial mixed culture
Dijamentiuk, AlexisUpdated 15 Nov 2024
… a bacterial consortium consisting of six bacterial species. Metabarcoding analysis was then conducted by Illumina sequencing of 16S …
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Biotic and abiotic drivers of Glomeromycotina and Mucoromycotina mycorrhizal associations in a durum wheat field
Taschen, ElisaUpdated 13 Mar 2026
Lien vers la fiche source Data related to the Article: "Contrasting biotic and abiotic drivers of Glomeromycotina and …
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Reads and pairwise distances from 10 samples of diatoms in Geneva lake
Franc, AlainUpdated 7 Mar 2023
Lien vers la fiche source This dataset contains 55 hdf5 files related to 10 samples (one per month …
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Microbial community dispersal in sourdough - data and scripts
VON GASTROW, LucasUpdated 30 Sept 2021
Lien vers la fiche source Metabarcoding and numbering data of sourdough and flour from 46 bakers and farmer …
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Synaqua - Datatable giving for each sample the number of reads per ASV and the ASV taxonomic identity
RIMET, FrédéricUpdated 9 Sept 2021
… paper "Competition between microbial species in freshwaters? Diatom metabarcoding shows that environmental filtering and mass effect are stronger …
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Companion guide
Terrat, SébastienUpdated 15 Jul 2025
… reader through the steps used in the study to compute functional diversity indices from a 16S metabarcoding dataset.
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Microbial community in stream microscale landscape
ECOBIOUpdated 28 Mar 2025
Lien vers la fiche source Microbial community data obtained using 16S, rbcL and ITS metabarcoding. Sample collected in …
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Microbiota of mature bean seeds and seed exudates
Marie SimoninUpdated 1 Mar 2023
… on microbiota of mature seeds and seed exudates. Metabarcoding 16S-V4, gyrB and ITS1 on Illumina MiSeq. Data …
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Variation of the microbiome of Bactrocera dorsalis with temperature and diet
Hafsi, AbirUpdated 25 Jun 2025
… and diet stress were assessed using 16S rRNA metabarcoding. Experiment were conducted between 2020 and 2021 using La …
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Replication data for: "Characterization of bacterial communities of cold-smoked salmon during storage"
Maillet, AurélienUpdated 12 May 2021
… bacterial community of cold smoked salmon by using 16S rRNA gene metabarcoding. This dataset also contains statistical outputs
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R scripts for "Pauvert et al. 2019. Microbial association networks give relevant insights into plant pathobiomes. BioRxiv, https://doi.org/10.1101/2020.02.21.958033"
Vacher, CorinneUpdated 9 Feb 2021
Lien vers la fiche source R scripts and datafiles used to infer microbial association networks from metabarcoding data …
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NGS data revealing the phyllosphere microbiome of wheat plants infected by the fungal pathogen Zymoseptoria tritici
Barroso Bergada, DidacUpdated 28 Oct 2022
… The current resource announcement details the fungal and bacterial metabarcoding datasets obtained by sampling wheat leaves infected by …
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Correlation with the software Halla between the immune response and microbiota composition in chicken
Kempf, FlorentUpdated 14 Nov 2024
Lien vers la fiche source Correlations between gut microbial species, assessed by 16S metabarcoding, and significantly differentially expressed …
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