Search results for Metabarcoding
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91 datasets for “Metabarcoding”
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DNA metabarcoding of foliar fungal communities in an untreated vineyard
Vacher, CorinneUpdated 18 Feb 2020
Lien vers la fiche source This sequence dataset (FASTQ format) was obtained by metabarcoding fungal communities of 20 …
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16S RNA metabarcoding dataset from microbiota of Label Rouge broiler carcass rinses
Hautefeuille, SophieUpdated 7 Apr 2025
… Carcasses were cuted in halves and 16S rRNA metabarcoding sequencing was performed before and after 7 days of …
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Diatom endemism: an assessment in high-altitude alpine lakes covering a large geographical range
RIMET, FrédéricUpdated 2 Jun 2022
Lien vers la fiche source Fasq files, metadata, and communities datatables.
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Data and analysis workflow for acidification and metabarcoding of serially fermented raw milks
Gapp, ChloéUpdated 9 Sept 2024
… Acidification kinetics were recorded by pH monitoring during each fermentation and bacterial communities were analysed by metabarcoding (V3 …
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METABARFOOD - Description of the sequences used in mock communities
Rué, OlivierUpdated 30 Jun 2023
Lien vers la fiche source This report gives informations about reference sequences used for the analysis of mock …
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16S RNA metabarcoding dataset from microbiota of conventionnal broiler carcass rinses
Hautefeuille, SophieUpdated 2 Jul 2024
… It includes 16S rRNA metabarcoding data from the broiler carcass rinses, both before and after 7 days of …
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mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Manzanilla, VincentUpdated 23 Jan 2024
… cruzi in a sylvatic ecotope of the YP, a metabarcoding approach was used to simultaneously identify vector blood …
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Data of the upcoming paper "Evaluating habitat restoration in lake littoral zones using multi-taxa eDNA survey"
GAUVIN, PAULAUpdated 26 Aug 2025
Lien vers la fiche source Sequences and DADA2 scripts
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Horse nemabiome benchmark
Sallé, GuillaumeUpdated 3 Jan 2023
Lien vers la fiche source This repository contains codes and input data used to benchmark the metabarcoding of …
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DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.
Pauvert, CharlieUpdated 17 Jan 2025
Lien vers la fiche source This sequence dataset (FASTQ format) was obtained by metabarcoding an artificial (mock) fungal …
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DNA metabarcoding analysis of the African wolf (Canis lupaster) diet
Gaubert, PhilippeUpdated 18 Feb 2026
Lien vers la fiche source In this study, we characterised for the first time through DNA metabarcoding the …
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Taxonomic or trait assignation of environmental sequences in regions with a poor taxonomic knowledge: case of river diatom metabarcoding with a new version of the annotated reference library Diat.barcode - supplementary data
Nicolosi Gelis, Maria MercedesUpdated 15 Dec 2025
Lien vers la fiche source Supplementary data of the manuscript --- Abstract ------ We present a new version of a …
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DNA metabarcoding of foliar fungal communities in conventional and organic vineyards
Pauvert, CharlieUpdated 7 May 2019
Lien vers la fiche source This sequence dataset (FASTQ format) was obtained by metabarcoding foliar fungal communities in …
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Test dataset for assessment FROGS ITS methodology
Rué, OlivierUpdated 9 Feb 2021
… methods and tools to process data from Fungi metabarcoding sequencing. Consequently, we have computer-generated reads of 250 …
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Hatching-data_Gautier-et-al_FIM
Montarry, JosselinUpdated 22 Jun 2021
Lien vers la fiche source Hatching rates of Globodera pallida in native and recolonized soils (A, D, F …
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Do sex, age or ecological needs shape an endangered brown bear population diet? New insights from faecal metabarcoding.
Pauly, GrégoireUpdated 13 Oct 2025
… We used metabarcoding and four markers specific to plants, fungi, arthropods and vertebrates to investigate the brown bear …
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A richer community of Botryosphaeriaceae within a less diverse community of fungal endophytes in grapevines than in adjacent forest trees revealed by a mixed metabarcoding strategy.
Laurent, BenoitUpdated 1 Apr 2020
… Using an innovative and mixed strategy of metabarcoding, this study aims to investigate the diversity of the fungal …
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Absolute quantitation of microbes using 16S rRNA gene metabarcoding: a rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike-in standard
Zemb, OlivierUpdated 15 Nov 2019
Lien vers la fiche source Metabarcoding of the 16S rRNA gene is commonly used to characterize microbial communities …
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Data of the paper "Environmental matrices need consideration: insights from water and biofilm environmental DNA for multi-taxonomic biomonitoring" (DOI: 10.1002/edn3.70079)
GAUVIN, PAULAUpdated 26 Aug 2025
Lien vers la fiche source - Genetic sequences (FASTQ) of algae (23S) (MiSeq), macroinvertebrates (COI) and fish (12S) (NovaSeq …
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Foliar fungal and bacterial communities of tree species in French Guiana.
Lesur Kupin, IsabelleUpdated 16 Jan 2023
Lien vers la fiche source This dataset gathers bacterial 16s and fungal ITS sequences describing the microbiota of …
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