Search results for Metabarcoding
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100 datasets for “Metabarcoding”
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Correlation with the software Halla between the immune response and microbiota composition in chicken
Kempf, FlorentUpdated 14 Nov 2024
Lien vers la fiche source Correlations between gut microbial species, assessed by 16S metabarcoding, and significantly differentially expressed …
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Test dataset for assessment FROGS 16S amplicon methodology
Rué, OlivierUpdated 16 Feb 2021
Lien vers la fiche source Grinder (v.0.5.3) (Angly, et al., 2012) was used to simulate …
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A ready-to-use database for DADA2: Diat.barcode_rbcL_312bp_DADA2 based on Diat.barcode v7
Keck, FrançoisUpdated 18 May 2021
… a database adapted to DNA metabarcoding (version v7: 23-02-2018)", https://doi.org/10.15454/HYRVUH, Portail …
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Resilience of helminth - gut microbiota interactions in a large mammal
Nuria MachUpdated 27 Sept 2023
… lumen without hampering the development of larval stages. Metabarcoding approaches were implemented to track faecal microbiota and cyathostomin …
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- Open Government Canada
Development of a coastal species characterization approach using environmental DNA (eDNA) using the marker COI
Fisheries and Oceans Canada | Pêches et Océans CanadaUpdated 24 Mar 2026
Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the …
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Environmental DNA data for Dicentrarchus labrax, Merluccius merluccius and Pagellus bogaraveo in the Bay of Biscay
ETH Zürich, SwitzerlandUpdated 24 Oct 2025
… The other half of the extracted DNA was analysed using metabarcoding with teleo primer. The raw metabarcoding data …
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eDNA-based survey of the marine vertebrate biodiversity off the west coast of Guadeloupe (French West Indies)
CNRS UMR 7205 ISYEBUpdated 26 Apr 2024
… eDNAs contained in the samples were analysed by metabarcoding using vertebrate–specific primers (Taberlet et al. 2018).
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Bioindication diatomées : comparaison microscopie / barcoding ADN. Listes floristiques, indices IBD. Projet AFB numéro 15000239 / A30.
Rivera, SinzianaUpdated 4 Dec 2018
… listes obtenues en métabarcoding (méthode des séquences filtrées avec seuil d'assignation à 60%) - "correspondance code station" : des …
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Replication data for "Revealing microbial consortia that interfere with grapevine downy mildew through microbiome epidemiology"
PaolaFOURNIERUpdated 1 Sept 2025
Lien vers la fiche source This study focuses on bacterial 16S and fungal ITS metabarcoding of topsoil, leaf …
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- Open Government Canada
Development of a coastal species characterization approach using environmental DNA (eDNA) using the marker Mifish (12S)
Fisheries and Oceans Canada | Pêches et Océans CanadaUpdated 24 Mar 2026
Species characterization by environmental DNA (eDNA) is a method that allows the use of DNA released into the …
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Data and scripts for "Resource landscape shapes the composition and stability of the human vaginal microbiota"
ALIZON, SamuelUpdated 18 Nov 2025
… with vaginal microbiota information (OTUs inferred from 16S metabarcoding data) and metabolomics data. The model folder contains the …
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- data.gov.au
Influence of offshore gas infrastructure on diet and trophic structure of predatory fish
Australian Ocean Data NetworkUpdated 5 Jun 2026
… Results from eDNA metabarcoding of a focal set of species confirmed these results and provided additional taxonomic resolution …
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Evidence for a gut microbial community conferring adaptability to abiotic and biotic stressors in phytophagous insects: the melon fruit fly Zeugodacus cucurbitae (Diptera:Tephritidae) as case study
Hafsi, AbirUpdated 2 Jul 2024
… cucurbitae strains under temperature, diet quality, and antibiotic treatment was assessed using 16S rRNA metabarcoding. Experiment was conducted …
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Metagenetic data and bacterial quantification of 310 Label Rouge broiler carcass samples
Hautefeuille, SophieUpdated 2 Apr 2025
… It includes 16S rRNA metabarcoding data from broiler carcass rinses before and after 7 days of storage at …
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Lactic4Safe : role of bacterial microbiota in the environment, raw milk, and artisanal uncooked pressed cheese, as well as the impact of farming, milking, and cheese-making practices on the colonization of cheese by zoonotic bacterial pathogens
Chochois, VincentUpdated 15 Apr 2025
… bacterial microbiota characterised using 16S rRNA short reads metabarcoding from cheese production and the environment during manufacturing. The …
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Bioinformatic scripts to assess the effect of the cropping system on both community and network α- and β-properties of fungal microbiota
Pauvert, CharlieUpdated 9 May 2019
… Microbial networks inferred from metabarcoding data lack replicability: consequences for next-generation biomonitoring, Submitted).
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Microbial communities in Ornithodoros phacochoerus ticks
Jourdan, HeleneUpdated 11 May 2026
… This dataset give the metabarcoding sequencing results.
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Effects of plant functional group removal on structure and function of soil communities across contrasting ecosystems
Fanin, NicolasUpdated 20 Jan 2025
… biomass (ind g-1) and trophic community composition Metabarcoding= OTU count FungalAssignation = Assignation of eah OTU to a …
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Replication Data for "Extensive multivariate dataset characterizing bacterial community diversity and Campylobacter contamination level in a large number of conventional broilers carcasses after air chilling and refrigerated storage"
Hautefeuille, SophieUpdated 27 Mar 2025
… It includes 16S rRNA metabarcoding data from broiler carcass rinses before and after 7 days of storage at …
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Seed Microbiota Database
Simonin, MarieUpdated 22 Aug 2022
… This database includes metabarcoding data from 63 seed microbiota studies on 50 plant species ( total of 3190 seed …
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