Search results for Sequence Retrieval
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17 datasets for “Sequence Retrieval”
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Source Data for G4 density in M. arenaria
Zotta Mota, Ana PaulaUpdated 12 Dec 2023
… the whole genome sequences of Meloidogyne arenaria. Using an in-house script, we retrieved only the non-overlapping …
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Source Data for G4 density in M. incognita
Zotta Mota, Ana PaulaUpdated 12 Dec 2023
… the whole genome sequences of Meloidogyne incognita. Using an in-house script, we retrieved only the non-overlapping …
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Source Data for G4 density in M. javanica
Zotta Mota, Ana PaulaUpdated 12 Dec 2023
… the whole genome sequences of Meloidogyne javanica. Using an in-house script, we retrieved only the non-overlapping …
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Transposable element annotation of Colletotrichum destructivum Cd709
Amselem, JoëlleUpdated 4 Dec 2025
… Consensus sequences were then classified using the PASTEC tool ( Hoede et al., 2014 ), based on the Wicker hierarchical …
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Transposable element annotation of Septoria linicola SE15195 and SE14017
Simon, AdelineUpdated 4 Dec 2025
… 2011) was used to detect repeated elements in the genome and to provide a consensus sequence for each …
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Transposable element annotation of Botrytis cinerea Sl3 and Vvl3
Simon, AdelineUpdated 27 May 2026
… Consensus sequences were then classified using the PASTEC tool (Hoede et al., 2014), based on the Wicker hierarchical …
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Clustered IMG VR v3 file: IMGVR70
Florian MaumusUpdated 30 Jul 2021
Lien vers la fiche source How this file was created? All proteins (n=66,585,678) were retrieved …
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Mapping of known effector genes on five Meloidogyne genomes
Danchin, EtienneUpdated 27 May 2021
… We retrieved the corresponding CDS sequences and aligned them to the M. incognita, M. arenaria, M. javanica, M …
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16S-ITS-23S-DB database march 2025
Pascal, GéraldineUpdated 18 Feb 2026
… To reduce redundancy, extracted sequences were dereplicated. After dereplication, the database comprised 238,028 16S–ITS–23S sequences …
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16S-ITS-23S-DB database nov. 2025
Pascal, GéraldineUpdated 18 Feb 2026
… To reduce redundancy, extracted sequences were dereplicated. After dereplication, the database comprised 289,759 16S–ITS–23S sequences …
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Absolute quantitation of microbes using 16S rRNA gene metabarcoding: a rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike-in standard
Zemb, OlivierUpdated 15 Nov 2019
… Here we present a method to retrieve the concentrations of the 16S rRNA gene per gram of any …
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Feature-matching based overlay of 7 years of high-resolution imagery collected by the TEMPO ecological module (EMSO-Azores observatory)
Univ Brest, CNRS, Ifremer, UMR6197 BEEP, F-29280 Plouzané, FranceUpdated 24 Dec 2025
Lien vers la fiche source The dataset contains raw screenshots retrieved from video sequences collected by the TEMPO …
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Simulated Dataset for assessment shotgun metagenomics short read methodology
Joanna, FOURQUETUpdated 30 Mar 2022
… Illumina sequencing platforms. 52,8 millions of paired-ends reads were extracted from 32 genomes retrieved from NCBI …
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Analyses of the root-knot nematode (Meloidogyne graminicola) transcriptome during rice (Oryza spp.) infection
Fernandez, DianaUpdated 21 Dec 2022
… graminicola RNA-Seq data were retrieved from 14 (7 × 2 replicates) cDNA libraries obtained from pre-parasitic M …
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Supporting data and scripts produced by the GraTools software
Ravel, SebastienUpdated 10 Mar 2026
… After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive analyses, including …
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Morphometry, and mass accumulation rates of Indo-Pacific Pleistocene coccoliths and associated Climatic Simulations
Updated 20 Oct 2023
… Pseudoemiliania) coccoliths, measured in 9 Tropical Indo-Pacific sequences retrieved during IODP (Exp353 and Exp363) and IMAGES (expeditions …
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Supplementary data of the review paper "Specialized metabolite modifications in Brassicaceae seeds and plants: diversity, functions and related enzymes""
Corso, MassimilianoUpdated 13 Dec 2023
… Enzyme amino acid sequences were retrieved from The Arabidopsis Information Resource (TAIR; https://www.arabidopsis.org/; genome release …
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