Search results for Pangenome
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23 datasets for “Pangenome”
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GBoS_trio_cattle_pangenome
SORIN, VALENTINUpdated 11 Mar 2026
Lien vers la fiche source Pangenome graph, paths, SV VCF file and NRUIs panel
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Genomic Resources for Apricot Pangenome Construction and TE Annotation
Blanchard, ISMAËLUpdated 24 Jul 2025
… Graph files per chromosome and the phylogenetic guide tree used for the pangenome are provided.
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Data used for the analysis described in GrAnnoT paper
Marthe, NinaUpdated 29 Oct 2025
Lien vers la fiche source GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and …
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Output from the analysis described in GrAnnoT paper
Marthe, NinaUpdated 29 Oct 2025
Lien vers la fiche source GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and …
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- ODS API
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GrAnnoT source code and scripts
Sabot, FrancoisUpdated 20 Mar 2025
Lien vers la fiche source GrAnnoT is an annotation transfer tool for pangenome graph. The source code at …
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Data used in the gratools paper
Sabot, FrancoisUpdated 6 Mar 2026
Lien vers la fiche source These are the data (mostly Pangenome variation graphs) that were used in the …
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Code source for GraTools v1.1.0
Ravel, SebastienUpdated 10 Mar 2026
Lien vers la fiche source This code is the original source code submitted for GraTools in March 2026 …
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panREPET paper accompanying dataset
Saidi, SomiaUpdated 30 Jul 2025
Lien vers la fiche source This dataset contains data corresponding to publication "panREPET: a reference-free pipeline for …
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Supporting data and scripts produced by the GraTools software
Ravel, SebastienUpdated 10 Mar 2026
… Using an Asian rice pangenome graph (13 accessions), we demonstrate its ability to easily extract subgraphs, compute depth …
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GBoS-Cattle-Pangeome
SORIN, VALENTINUpdated 10 Oct 2025
Lien vers la fiche source Graph pangenome
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Supporting data and code for the African Rice Panreference produced by the frangiPANe software
Tranchant, ChristineUpdated 27 Jan 2023
Lien vers la fiche source We present here FrangiPANe ( https://github.com/tranchant/frangiPANe ), a pipeline developed to …
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fermented_vegetables_microbiomes_F3M_gene_catalog_V1.1.1
Chaillou, StephaneUpdated 7 Jan 2026
… The catalogs has been constructed from the pangenome data of 91 bacterial species (=96 specI) among the most …
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meat_microbiomes_F3M_gene_catalog_V1.1.1
Chaillou, StephaneUpdated 7 Jan 2026
… The catalog has been constructed from the pangenome data of 44 bacterial species (corresponding to 46 specI) among …
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MetaNutriUnify, a curated and unified human gut metagenomics and nutritional data collection
Daussin, AntoineUpdated 29 Nov 2024
… Metagenomic Species Pangenomes (MSP) species abundance table and related GTDB taxonomy (GTBD-tk version r220) (final_msp.7z …
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Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota
Plaza Onate, FlorianUpdated 11 Aug 2025
… the updated Integrated Gene Catalog of the human gut microbiota (aka IGC2) 1,989 Metagenomic Species Pangenomes (MSPs …
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A catalog of genes, genomes and species of the dog (Canis lupus familiaris) intestinal microbiota
PLAZA ONATE, FlorianUpdated 12 Aug 2025
… 434 Metagenome-Assembled Genomes (MAGs) 234 Metagenomic Species Pangenomes (MSPs) This dataset can be used to analyze shotgun …
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MetaChick: characterization of the chicken caecal metagenome by deep shotgun sequencing
PLAZA ONATE, FlorianUpdated 10 Jun 2024
… Metagenome-Assembled Genomes (MAGs) 2,420 Metagenomic Species Pangenomes (MSPs) This dataset can be used to analyze shotgun …
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Taxonomic profiles, functional profiles and manually curated metadata of human fecal metagenomes from public projects coming from colorectal cancer studies
BARBET, PaulineUpdated 20 May 2025
… catalogue ( 8.4M genes ) clustered into Metagenomic Species Pangenomes taxonomically and functionally annotated. Data provided The data associated …
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A catalog of genes and species of the human skin microbiota
PLAZA ONATE, FlorianUpdated 4 Oct 2023
… a non-redundant high-quality catalog of 2.9 million genes 392 Metagenomic Species Pangenomes (MSPs) This dataset …
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A catalog of genes, genomes and species of the cat (Felis catus) intestinal microbiota
PLAZA ONATE, FlorianUpdated 11 Oct 2023
… 622 Metagenome-Assembled Genomes (MAGs) 344 Metagenomic Species Pangenomes (MSPs) This dataset can be used to analyze shotgun …
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