Search results for DNA sequence
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77 datasets for “DNA sequence”
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Viral OTU from blood and fecal human samples
Petit, Marie AgnesUpdated 21 Jun 2024
… Data are organized as one file per vOTU, in the gff format (annotations plus DNA sequence)
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Metabarcoding data for diatom samples in "Recommendations for the preservation of environmental samples in diatom metabarcoding studies"
Bouchez, AgnesUpdated 19 Oct 2022
… A 312 bp fragment of the rbcL chloroplastic gene was amplified from DNA extracts using Takara LA Taq …
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Occurences of the Boeckella genus (Copepoda, Calanoida) in New Caledonia
UMR BOREA 8067 (Biologie des ORganismes et des Ecosystèmes Aquatiques)Updated 28 May 2024
… extraction date, laboratory operator) and fasta files with all found haplotypes sequences and primer used. DNA extraction (https …
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Data obtained in the study "Ornithodoros maritimus as a vector of Babesia sp. YLG in Yellow-legged gull"
Bonsergent-Guillou, ClaireUpdated 4 May 2023
… DNA of Larus michahellis and Ornithodoros maritimus) for the different organs studied - Result of amplification and sequencing of …
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Xcc 8004 Re-annotation Bankit Submission Proof
Carrere, SebastienUpdated 22 Jul 2021
… TOTAL # OF SEQS:1 ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END##
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Development of SNP markers for the identification of chestnut species, hybrids and varieties
Larue, ClementUpdated 9 Mar 2021
… single nucleotide polymorphism (SNP) markers using restriction-associated DNA sequencing. Out of 343 loci tested using the MassARRAY …
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Metabarcoding data analysis of foliar fungal communities associated with 84 woody species.
Lesur Kupin, IsabelleUpdated 26 Sept 2022
… sample (collected on Fagus sylvatica) sequenced twice, and one negative control for DNA extraction. The 88 environmental samples …
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WGS Mutant Gelless
Lemaire-chamley MartineUpdated 3 Mar 2025
… Genomic DNA was extracted as previously described (Garcia et al., 2016) and sequenced on an Illumina HiSeq 2000 …
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Lac de la Muzelle - Carottage Muz12-I – Plant cover and erosion dynamics : impacts of pastoral activities and climatic changes over the last 1600 years - 2017 – Zone Atelier Alpes (IGSN:IEFRA00A4)
EDYTEMUpdated 28 May 2026
… Composite coring sequence :site Muz12-I – avril 2012(IGSN:IEFRA00A4). The sequence couved périod from 303 to 2012 …
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Reads and pairwise distances from 10 samples of diatoms in Geneva lake
Franc, AlainUpdated 7 Mar 2023
… DNA has been extracted, a fragment amplified (a marker of 312 bp in rbcL fragment), and sequenced. Next …
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Data linked to the population genomic study of the worldwide invasion history of Xylosandrus crassiusculus using RADseq data
Kerdelhue, CaroleUpdated 11 Oct 2023
… DNA was digested using 250 ng of DNA in 22 µL per sample and 0.5 µL of …
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16S-ITS-23S-DB database march 2025
Pascal, GéraldineUpdated 18 Feb 2026
… To reduce redundancy, extracted sequences were dereplicated. After dereplication, the database comprised 238,028 16S–ITS–23S sequences …
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16S-ITS-23S-DB database nov. 2025
Pascal, GéraldineUpdated 18 Feb 2026
… To reduce redundancy, extracted sequences were dereplicated. After dereplication, the database comprised 289,759 16S–ITS–23S sequences …
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Data for Phaeoexplorer publication: Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
Godfroy, OlivierUpdated 12 Nov 2024
Lien vers la fiche source The Phaeoexplorer project sequenced 60 genomes corresponding to 44 brown algal and sister …
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Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators
Guillaumie, SabineUpdated 10 Feb 2020
… About 1.5 µg of DNA from both BACs VVCS1H018A11 and VVCS1H006A20 were pooled and sequenced using the …
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Fermented vegetables metavirome - viral metagenomic dataset
CANTUTI, GENDRE, JULIAUpdated 17 Jan 2025
… nucleic acids were extracted, DNA and RNA were amplified separately and shotgun sequenced using Illumina NovaSeq plateform. The …
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Absolute abundance data for the BCMicrobiome project.
Lesur Kupin, IsabelleUpdated 29 Aug 2022
… The number of copies of the target DNA sequences (16S for bacteria and ITS for fungi) per uL …
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An 18S V4 rDNA metabarcoding dataset of protist diversity in the Atlantic inflow to the Arctic Ocean, through the year and down to 1000 m depth.
University of Oslo, Department of Biosciences, PO Box 1066 Blindern, NO-0316 Oslo, NORWAY University of Duisburg-Essen, Fakultät für Biologie, Universitätsstr. 5, DE-45141 Essen, GERMANYUpdated 12 May 2021
… Sequences were clustered into Amplicon Sequence Variants (ASVs), representing protist genotypes, with the dada2 pipeline. Taxonomic classification was …
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Single-nucleotide polymorphism (SNP) data for 1,085 adult individuals from 54 range-wide populations of 5 European conifer species
Farsakoglou, Anna-MariaUpdated 5 Nov 2025
… based on DNA regions containing loci with a known adaptive function or putatively under selection, sequences of orthologous …
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Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications
Ben Chehida, YacineUpdated 11 Mar 2021
… The archive here includes the mitochondrial DNA sequence alignments (unique haplotype and individual level), and the genotypes for …
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