Search results for Bioinformatics
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60 datasets for “Bioinformatics”
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Development of chimeric multivalent proteins for serological diagnosis of African animal trypanosomosis
Boulange, AlainUpdated 11 Jul 2025
… After identifying candidate antigens, we selected specific ones using bioinformatics and designed five chimeric constructs in silico: three …
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RMQS1 16S taxonomy
Karimi, BattleUpdated 5 Dec 2023
… Some sites did not pass laboratory or bioinformatics step to attain 10k sequences before taxonomic assignation, they dot …
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Dissecting the control of shoot development in grapevine: genetics and genomics identify potential regulators
Guillaumie, SabineUpdated 10 Feb 2020
… Assembly of the PacBio reads was performed following the HGAP workflow (https://github.com/PacificBiosciences/Bioinformatics-Training/wiki …
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RMQS1 16S microbial habitat
Karimi, BattleUpdated 5 Dec 2023
… Some sites did not pass laboratory or bioinformatics steps to attain 10,000 sequences before post-clustering, so …
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Metabarcoding data analysis of foliar fungal communities associated with 84 woody species.
Lesur Kupin, IsabelleUpdated 26 Sept 2022
… Cestas, France, 44.73734 N ; 0.77492 W). Bioinformatics scripts as well as raw and filtered ASV Tables …
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Biomfile and metadata of study on microbial electrosynthesis for biogas upgrading and desulfurisation
NTAGIA, EleftheriaUpdated 28 Oct 2025
… 1) Bioinformatics outputs: microbial community composition and diversity across the distinct operational phases of each reactor. 2) Metadata …
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Improvement of eukaryotic protein predictions from soil metagenomes
Belliardo, CaroleUpdated 13 Apr 2022
… Using a bioinformatics pipeline, we have filtered 7.9 billion contigs from 6,872 soil metagenomes in the …
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RMQS1 16S unrarefied cleaned sequences
Terrat, SébastienUpdated 27 Aug 2024
… For sites that did not pass laboratory or bioinformatics steps to attain 10,000 sequences before post-clustering …
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RMQS1 16S operational taxonomic units
Terrat, SébastienUpdated 26 Aug 2024
… Some sites did not pass laboratory or bioinformatics step to attain 10,000 sequences before post-clustering, they …
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Supporting data and scripts produced by the GraTools software
Ravel, SebastienUpdated 10 Mar 2026
… a wide range of applications, from population genetics to breeding and genomic medicine, for both biologists and bioinformaticians.
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Taxonomic or trait assignation of environmental sequences in regions with a poor taxonomic knowledge: case of river diatom metabarcoding with a new version of the annotated reference library Diat.barcode - supplementary data
Nicolosi Gelis, Maria MercedesUpdated 15 Dec 2025
… We show that a direct bioinformatic assignment of environmental sequences to traits has a strong interest in French …
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Linked Avian Influenza Epidemiological and Genomic Data for Epidemic Intelligence (2012-2021)
ARINIK NéjatUpdated 29 Oct 2024
… cases, publicly provided by the Bacterial and Viral Bioinformatics Resource Center (BV-BRC) [2]. The association between EMPRES …
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Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance
Thévenon, SophieUpdated 2 Dec 2022
Lien vers la fiche source Gene expression data, scripts for bioinformatic and statistical analyses, and output tables related …
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Genotyping data for field samples from Haitian coffee agroforestry systems and international collection accessions
Millet, Claude PatrickUpdated 9 Jan 2026
… This file contains the Haplotype data obtained from HiPlex multiplex amplicon sequencing, output from a custom bioinformatics pipeline …
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Supplementary information for: The rice ILI2 locus is a bidirectional target of the African Xanthomonas oryzae pv. oryzae major Transcription Activator-Like Effector TalC but does not contribute to disease susceptibility
Doucouré, HindaUpdated 26 Nov 2024
… a TalC target susceptibility gene redundant with OsSWEET14. Bioinformatics analysis identified a rice locus named ATAC composed of …
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220126_VH00228_82_AAAV3TVM5_LTaTReg_EXP1_TregThy
BORELLI, AlexiaUpdated 12 Dec 2024
… https://github.com/CIML-bioinformatic/MIlab_LTaTreg-Thymus Description of the sample production: Single cell suspensions of thymus …
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Temporal transcriptome analysis of Bacillus subtilis NDmed in the submerged biofilm model
Cyprien, GuérinUpdated 6 Dec 2021
… variations as described in (Nicolas et al., 2009, Bioinformatics 25, 2341-2347). Data were quantile normalized using LIMMA …
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Mutation accumulation and whole genome sequencing of bacteriophage lambda
Lopez, JulienUpdated 15 Jan 2026
… Read quality was controlled using fastQC v0.11.9 (https://www.bioinformatics.babraham.ac.uk/projects/fastqc/). The …
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Phytool v3: a annoted reference barcoding library for algae
RIMET, FrédéricUpdated 15 Mar 2024
… for 16S and 23S (Canino et al., 2023), bioinformatics pipeline and comparison to microscopy with natural samples (Nicolosi …
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Dataset - Monitoring marine mammals around Réunion Island (southwest Indian Ocean) using environmental DNA (eDNA)
Nikolic, NatachaUpdated 31 Mar 2025
… Sequence data was processed using a NatureMetrics custom bioinformatics pipeline for quality filtering, dereplication, and taxonomic assignment. Samples …
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