Search results for Bioinformatics
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60 datasets for “Bioinformatics”
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RMQS1 16S bioinformatic config files and control sample data
Terrat, SébastienUpdated 22 Aug 2024
… This dataset contains config files used to run the bioinformatic pipeline and the control sample data that were …
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- ODS API
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mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Manzanilla, VincentUpdated 23 Jan 2024
Lien vers la fiche source Test data for the mbctools wrapper. Context and description: Chagas disease (CD) is …
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- ODS API
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ICEscreen
Lacroix, ThomasUpdated 6 Dec 2022
Lien vers la fiche source ICEscreen is a bioinformatic pipeline for the detection and annotation of ICEs (Integrative …
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- ODS API
- Socrata networkLive preview
SARS-CoV-2 Variant Proportions
CORVD Laboratory BranchUpdated 23 Oct 2026
… Sequences contributed to CDC’s national genomic sequencing and bioinformatics efforts fuel this U.S. genomic surveillance system …
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- SODA API
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Development of sequenced-based microsatellite genotyping protocol
Chancerel, EmilieUpdated 30 Oct 2023
… We described an optimized laboratory and bioinformatics workflow for time and cost effective development of sequence-based microsatellite …
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MERCI effector-enriched motifs in the 100 first amino acids of M. incognita proteins
Danchin, EtienneUpdated 27 May 2021
… 4 motifs identified as enriched in the known effector proteins as described in (Vens, Rosso, Danchin, Bioinformatics, 2011)
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- ODS API
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Rapid meiotic prophase chromosome movements in Arabidopsis thaliana are linked to essential reorganization at the nuclear envelope [Supplementary data]
Charif, DelphineUpdated 20 Nov 2024
Lien vers la fiche source This dataset contains the bioinformatic workflow used to detect T-DNA insertion sites …
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Replication data for: "Gene Regulatory Network Inference Methodology for Genomic and Transcriptomic Data Acquired in Genetically Related Heterozygote Individuals", 100 simulated datasets of RNA gene expressions of sunflower hybrids
Pomiès, LiseUpdated 23 Oct 2024
… in genetically related heterozygote individuals", Bioinformatics, 2022, https://doi.org/10.1093/bioinformatics/btac445 They are artificial expression …
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- ODS API
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Leaf microbiome data for European cultivated grapevine (Vitis vinifera L.) during downy mildew (Plasmopara viticola) epidemics in three wine-producing regions in France
Barroso Bergada, DidacUpdated 28 Oct 2022
… We provide the raw metabarcoding datasets, the Amplicon Sequence Variant (ASV) tables obtained after bioinformatic processing, the metadata …
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- ODS API
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DNA metabarcoding of a mock community of 189 fungal strains associated to plants and soils.
Pauvert, CharlieUpdated 17 Jan 2025
… This sequence dataset was used to compare several bioinformatic approaches (Pauvert et al. Bioinformatics matters: the accuracy of …
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NGS data revealing the phyllosphere microbiome of wheat plants infected by the fungal pathogen Zymoseptoria tritici
Barroso Bergada, DidacUpdated 28 Oct 2022
… We provide the raw metabarcoding datasets, the Amplicon Sequence Variant (ASV) tables obtained after bioinformatic processing, the metadata …
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- GEOJSON
- ODS API
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The mitochondrial orf117Sha gene desynchronizes pollen development and causes pollen abortion in the Arabidopsis Sha CMS. [Supplementary data]
Charif, DelphineUpdated 16 Apr 2024
Lien vers la fiche source This dataset contains parameters and data used for the bioinformatics analysis performed to …
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Amplicon Sequence Variant (ASV) table obtained by metabarcoding foliar fungal communities in conventional and organic vineyards
Pauvert, CharlieUpdated 30 Jul 2019
… This table was generated after the application of the bioinformatics scripts (at https://doi.org/10.15454/NSHUAQ …
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- ODS API
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Zymoseptoria tritici IPO323 genome reannotation
Lapalu, NicolasUpdated 3 Apr 2023
… transcript and protein evidence using InGenAnnot, a novel bioinformatics suite. Overall, 13,414 re-annotated gene models (RGMs …
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- ODS API
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Statistical analysis scripts to analyze metabarcoding data of fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvignon’)
Vacher, CorinneUpdated 15 Dec 2022
… powdery mildew (Erysiphe necator) under various drought conditions. Bioinformatic scripts and raw and filtered ASV tables in QIIME2 …
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- ODS API
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Metabarcoding data analysis of fungal communities associated with 203 full-sib oak trees (Quercus robur) located in Bourran (France).
Lesur Kupin, IsabelleUpdated 26 Sept 2022
… metabarcoding data we obtained have been analyzed using Bioinformatics scripts. Raw and filtered ASV Tables are available here …
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- ODS API
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Fermented vegetables metavirome - viral metagenomic dataset
CANTUTI, GENDRE, JULIAUpdated 17 Jan 2025
… The bioinformatic workflow used for data processing encompasses quality filtering, reads assembly, clustering of contigs into species-level …
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Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum
Ben Chehida, YacineUpdated 15 Nov 2024
… the different porpoise species and 7 outgroup sequences) and various scripts used for the bioinformatics and data analyses.
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Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Berger, AudricUpdated 4 Mar 2026
… ViroSeek is a simplified bioinformatics pipeline for the taxonomic analysis of second-generation sequencing data. It contains: Main …
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- ODS API
- Socrata networkLive preview
SARS-CoV-2 Variant Proportions
CDCUpdated 8 Nov 2026
… The thousands of sequences analyzed every week through CDC’s national genomic sequencing and bioinformatics efforts fuel this …
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- SODA API