Search results for Bioinformatics
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60 datasets for “Bioinformatics”
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METABARFOOD - Results on mock communities, choice of the bioinformatics solution
Rué, OlivierUpdated 30 Jun 2023
Lien vers la fiche source Results obtained from mock communities
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Bioinformatics scripts
Lallias, DelphineUpdated 20 Jun 2023
Lien vers la fiche source Bioinformatics scripts used for the EpiRADseq analyses
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Plan de gestion de données de la plateforme de bioinformatique Migale
LOUX, ValentinUpdated 9 Sept 2024
Lien vers la fiche source Plan de gestion de données d'entité de la plateforme bioinformatique Migale. (MIGALE …
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Metabarcoding datasets and bioinformatic scripts for the LEARN_BIOCONTROL project
Vacher, CorinneUpdated 8 Feb 2022
… L.) leaves collected in the LEARN-BIOCONTROL project. Bioinformatic scripts used to analyze the sequence data. Raw and …
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Bioinformatic scripts used to analyze fungal metabarcoding data obtained from Vitis vinifera leaves
Vacher, CorinneUpdated 29 Jun 2021
Lien vers la fiche source Bioinformatic scripts used to sort, filter and analyze fungal raw sequence data obtained …
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Bioinformatic and statistical scripts to analyze the leaf-associated fungal community of wild plant populations
Ma, YuxinUpdated 1 Feb 2021
Lien vers la fiche source This dataset contains R-scripts to perform bioinformatic and statistical analysis on leaf …
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Bioinformatic and statistical scripts to analyze acorn mycobiota structure and composition
Fort, TaniaUpdated 28 Jun 2019
Lien vers la fiche source This dataset contains R-scripts to perform bioinformatic and statistical analysis on acorn …
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The use of nanopore sequencing to analyze the chloroplast transcriptome part 2 – bioinformatic analyzes and virtual RN blots
DELANNOY, EtienneUpdated 6 Jun 2024
… After the generation of the nanopore reads, several bioinformatic steps are required to analyze the data. In this …
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Bioinformatic scripts to analyze metabarcoding data of fungal communities associated with two grapevine varieties (Vitis vinifera ‘Regent’ and ‘Cabernet-Sauvignon’)
Vacher, CorinneUpdated 3 Feb 2021
Lien vers la fiche source This archive provides the bioinformatic scripts used to analyze a metabarcoding dataset (available …
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Bioinformatic scripts allowing the comparison of fungal metabarcoding pipelines
Pauvert, CharlieUpdated 2 Sept 2019
… These bioinformatics scripts were applied to the sequences available at https://doi.org/10.15454/8CVWRR (Pauvert et …
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Bioinformatic scripts to assess the effect of the cropping system on both community and network α- and β-properties of fungal microbiota
Pauvert, CharlieUpdated 9 May 2019
Lien vers la fiche source These bioinformatics scripts were applied to the sequences available at https://doi.org …
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Bioinformatic and statistical scripts for "Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea, New Phytologist"
Fort, TaniaUpdated 9 Feb 2021
… The bioinformatic script was applied to raw sequences after paired-end sequences were joined using PEAR v0.9 …
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Data and Results for Mapler paper
MAURICE, NicolasUpdated 26 Jun 2025
Lien vers la fiche source RO-crate containing reads, assemblies and bins, of 3 metagenomic datasets of increasing …
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Data from: Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra
Rogier, OdileUpdated 4 Sept 2020
Lien vers la fiche source This dataset includes analysis files for the paper "Accuracy of RNAseq based SNP …
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Brassicaceae transposable elements copies and Arabidopsis thaliana annotations
Baud, AgnèsUpdated 3 Jan 2022
Lien vers la fiche source The Brassicaceae TE copies from Arabidopsis thaliana Col-0 ecotype, Arabidopsis lyrata, Capsella …
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FirmiData: Annotation of ICEs and IMEs in 40 Firmicutes genomes
LAO, JulieUpdated 22 Nov 2024
Lien vers la fiche source Manually curated reference annotation of Integrative Conjugative Elements (ICEs) and Integrative and Mobilizable …
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GeCKO - Durum Wheat domestication use case
Ardisson, MorganeUpdated 10 Mar 2023
Lien vers la fiche source GeCKO provides four workflows (DataCleaning, ReadsMapping, VariantsCalling, and VcfFiltering), which allow one to …
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Structural variation of the Charolais breed bovine genome
Eche, CamilleUpdated 20 Nov 2024
Lien vers la fiche source The 5 vcf files contain structural variants detected with respectively Hifi (40X), CLR …
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DMP of GenoToul Bioinfo facility
Hoede, ClaireUpdated 14 Dec 2023
Lien vers la fiche source The data management plan of the infrastructure concerns three types of data: • Data …
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Cupressus sempervirens transcriptomic data
Lesur Kupin, IsabelleUpdated 3 Feb 2026
Lien vers la fiche source Isoseq sequence analysis was perfomed on transcriptomic data. Full-length transcript sequences obtained …
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