Search results for tree trimming
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10 datasets for “tree trimming”
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A catalog of genes, genomes and species of the dog (Canis lupus familiaris) intestinal microbiota
PLAZA ONATE, FlorianUpdated 12 Aug 2025
… The 40 alignments were merged and trimmed with trimAl (parameters: -automated1). Finally, the phylogenetic tree was computed with …
- CSV
- JSON
- GEOJSON
- ODS API
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MetaChick: characterization of the chicken caecal metagenome by deep shotgun sequencing
PLAZA ONATE, FlorianUpdated 10 Jun 2024
… The 40 alignments were merged and trimmed with trimAl (parameters: -automated1). Finally, the phylogenetic tree was computed with …
- CSV
- JSON
- GEOJSON
- ODS API
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Updated Metagenomic Species Pan-genomes (MSPs) of the human gastrointestinal microbiota
Plaza Onate, FlorianUpdated 11 Aug 2025
… The alignments were merged and trimmed with trimAl (parameters: -automated1). Finally, the phylogenetic tree was computed with FastTreeMP …
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- JSON
- GEOJSON
- ODS API
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An updated catalog of genes and species of the pig gut microbiota
Plaza Onate, FlorianUpdated 19 Sept 2023
… The 40 alignments were merged and trimmed with trimAl (parameters: -automated1). Finally, the phylogenetic tree was computed with …
- CSV
- JSON
- GEOJSON
- ODS API
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MicroReset: characterization of the rabbit (Oryctolagus cuniculus) fecal metagenome and resistome by deep shotgun sequencing
PLAZA ONATE, FlorianUpdated 6 Aug 2025
… alignments were concatenated and trimmed using trimAl (parameter: `-automated1`). A maximum-likelihood phylogenetic tree was constructed with FastTreeMP …
- CSV
- JSON
- GEOJSON
- ODS API
- Opendatasoft hubLive preview
A catalog of genes, genomes and species of the cat (Felis catus) intestinal microbiota
PLAZA ONATE, FlorianUpdated 11 Oct 2023
… The 40 alignments were merged and trimmed with trimAl (parameters: -automated1). Finally, the phylogenetic tree was computed with …
- CSV
- JSON
- GEOJSON
- ODS API
- Opendatasoft hubLive preview
A catalog of genes and species of the human skin microbiota
PLAZA ONATE, FlorianUpdated 4 Oct 2023
… The 40 alignments were merged and trimmed with trimAl (parameters: -automated1). Finally, the phylogenetic tree was computed with …
- CSV
- JSON
- GEOJSON
- ODS API
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Test dataset for assessment FROGS 16S amplicon methodology
Rué, OlivierUpdated 16 Feb 2021
… Finally, we used cutadapt (v1.7.1) to trim primers from the generated reads. Trimmed sequences were not …
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- JSON
- GEOJSON
- ODS API
- California Open Data
Vegetation - Carnegie SVRA [ds2946]
California Department of Fish and WildlifeUpdated 11 Nov 2026
… For woodland vegetation types, trees on the edge of the polygon were included when they were within approximately …
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- ARCGIS GEOSERVICES REST API
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- ZIP
- GEOJSON
- KML
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List of Products Exported
International Trade CentreUpdated 5 May 2026
… Special woven fabrics; tufted textile fabrics; lace; tapestries; trimmings; embroidery, Animal or vegetable fats and oils and their …
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- JSON
- GEOJSON
- ODS API