Search results for SNP
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109 datasets for “SNP”
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Plasmopara halstedii, SNP matrix of 17 french pathotypes
Legrand, LudovicUpdated 13 Jun 2023
Lien vers la fiche source Matrice SNP pour 17 génotypes de Plasmopara halstedii produite a partir d'un …
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GenoTriplo: A SNP genotype calling method for triploids
Roche, JulienUpdated 30 Aug 2024
Lien vers la fiche source Luminescence dataset for the GenoTriplo publication results
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Pollen contamination and mating structure in maritime pine (Pinus pinaster Ait.) clonal seed orchards revealed by SNP markers
Bouffier, LaurentUpdated 15 Oct 2024
… Pinus pinaster Ait.) clonal seed orchards revealed by SNP markers" Bouffier et al. 2023 (https://peercommunityjournal.org/articles …
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Select SNP for Imputation software
Herault, FredericUpdated 3 Dec 2020
Lien vers la fiche source Select SNP subset for Imputation (SS4I) is a tool dedicated to the selection …
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70 highly validated SNP markers for Quercus ilex
Bonal, RaúlUpdated 26 Sept 2019
Lien vers la fiche source 70 highly validated SNP markers for Quercus ilex developped from ddRAD-Seq data …
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Data from: Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra
Rogier, OdileUpdated 4 Sept 2020
Lien vers la fiche source This dataset includes analysis files for the paper "Accuracy of RNAseq based SNP …
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76 highly validated SNP markers for Juniperus thurifera
Villellas, JesusUpdated 8 Apr 2020
Lien vers la fiche source 76 highly validated SNP markers for Juniperus thurifera developped from ddRAD-Seq data …
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The 29 maize lines SNP and SV variant set
Iampietro, CaroleUpdated 10 Feb 2026
Lien vers la fiche source The dataset corresponds to a set of variants, including SNPs as well as …
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Replication Data for: Complex evolutionary history of coffees including Coffea canephora (Robusta coffee) revealed by full plastid genomes and 28,800 nuclear SNPs analyses
Guyot, RomainUpdated 9 Mar 2020
Lien vers la fiche source The dataset concerns all chloroplast complete sequences for Coffea genus. Sequences were annotated …
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BioDivA : 50K SNP genotypes
Restoux, GwendalUpdated 13 Dec 2022
Lien vers la fiche source The dataset consists in the 50K SNP genotypes for the autosomes mapped on …
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Parentage assignment in ducks using a 96 SNP panel.
Chapuis, HerveUpdated 11 Apr 2024
… inconnu et de leurs parents potentiels pour 96 SNP. En utilisant un package adéquat, le script fourni permet …
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EPITREE project - WGS SNPs Oak
Lesur Kupin, IsabelleUpdated 13 Jul 2020
… Thus, we performed a global SNPs detection and considered three SNP calling algorithms: bcfTools , FreeBayes and GATK. In …
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Genotyping of 4 European sea bass families with the DlabCHIP SNPs genotyping array
MARBEC, Univ. Montpellier, Ifremer, CNRS, IRD, 34250 Palavas-les-Flots, FranceUpdated 12 May 2021
… All 1334 individuals were genotyped with a ThermoFisher AxiomTM Sea Bass 57k SNP DlabChip at the genotyping platform …
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Medicago truncatula SNP temporal data from: "Power and limits of selection genome scans on temporal data from a selfing population"
Gay, LaureneUpdated 12 May 2020
Lien vers la fiche source SNP data from a population located in Cape Corsica (42°58.406’ North …
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Genotyping dataset (medium-density SNPs) used to analyse the genetic diversity and population structure of four Senegalese sheep breeds
Flori, LaurenceUpdated 26 Sept 2022
Lien vers la fiche source This dataset includes genotypes of 47 sheeps for 44,321 variants (SNPs). Animals …
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Extended Diversity Analysis of Cultivated Grapevine Vitis vinifera with 10K genome-wide SNPs
Le Paslier, Marie-ChristineUpdated 19 Mar 2025
Lien vers la fiche source Abstract:The dataset, comprising 10207 SNPs for 783 grape cultivars and without missing …
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SNP4OrphanSpecies: A bio-informatic pipeline to isolate robust molecular markers for phylogeny, phylogeographical and population genetic studies in non-model species.
Penaud, BenjaminUpdated 27 Sept 2021
Lien vers la fiche source This pipeline performs a de-novo genome assembly, identifies single copy genes in …
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FruitBreedomics apple high-density SNP genotyping dataset
Denancé, CarolineUpdated 22 Jan 2021
Lien vers la fiche source This dataset contains SNP data obtained by using the Axiom®Apple480K array (Bianco …
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Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera
Garsmeur, OlivierUpdated 24 Nov 2025
Lien vers la fiche source Data include: (i) description table (TAB) listing accessions and their associated data (ii …
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Single-nucleotide polymorphism (SNP) data for 1,085 adult individuals from 54 range-wide populations of 5 European conifer species
Farsakoglou, Anna-MariaUpdated 5 Nov 2025
… Three different datasets are provided for each species: (1) target SNPs (TARGET), (2) de novo SNPs - detected within …
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